Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSBG_03335Hypothetical protein. (565 aa)    
Predicted Functional Partners:
CSBG_03245
Hypothetical protein.
  
     0.608
CSBG_03261
Hypothetical protein.
  
     0.608
CSBG_00324
Hypothetical protein.
 
   
 0.496
CSBG_00698
Hypothetical protein.
  
     0.492
CSBG_03334
Hypothetical protein.
       0.476
CSBG_03551
Hypothetical protein.
 
   
 0.475
CSBG_03336
Hypothetical protein.
       0.468
CSBG_03079
Phage/plasmid primase, P4 family domain-containing protein.
 
  
 0.465
CSBG_01942
Hypothetical protein.
   
    0.437
CSBG_00704
Phage/plasmid primase, P4 family domain-containing protein.
  
     0.434
Your Current Organism:
Clostridium sp. 7243FAA
NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA
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