Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSBG_03341Hypothetical protein. (452 aa)    
Predicted Functional Partners:
CSBG_03342
Hypothetical protein.
 
 0.988
CSBG_00857
Hypothetical protein.
 
 0.889
CSBG_03340
Hypothetical protein.
 
     0.857
CSBG_03339
Hypothetical protein.
 
   
 0.692
CSBG_00755
Hypothetical protein.
 
 0.667
CSBG_00169
Hypothetical protein.
  
     0.664
CSBG_01640
Hypothetical protein.
 
 0.649
CSBG_03240
Putative bacteriocin export ABC transporter, lactococcin 972 group.
 
 0.639
CSBG_03343
Hypothetical protein.
       0.636
CSBG_00905
Hypothetical protein.
  
 0.590
Your Current Organism:
Clostridium sp. 7243FAA
NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA
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