Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSBG_03548Hypothetical protein. (56 aa)    
Predicted Functional Partners:
CSBG_00139
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
    
 0.941
CSBG_02031
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
    
 0.941
CSBG_03547
Hypothetical protein.
 
     0.886
CSBG_03533
Hypothetical protein.
     0.789
CSBG_00932
2-oxoacid:acceptor oxidoreductase, alpha subunit.
    
 0.742
CSBG_02666
Hypothetical protein.
     
  0.701
CSBG_00189
acyl-CoA dehydrogenase, short-chain specific.
  
 
 0.588
CSBG_00188
3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.563
CSBG_02867
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.556
CSBG_02405
Hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.542
Your Current Organism:
Clostridium sp. 7243FAA
NCBI taxonomy Id: 457396
Other names: C. sp. 7_2_43FAA, Clostridium sp. 7_2_43FAA
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