Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHO84919.1RNA polymerase sigma factor RpoD. (396 aa)    
Predicted Functional Partners:
EHO80343.1
DNA-directed RNA polymerase, beta subunit.
 
 0.988
EHO81702.1
DNA-directed RNA polymerase, alpha subunit.
 
 0.984
EHO80344.1
DNA-directed RNA polymerase, beta' subunit.
 
 0.984
EHO84918.1
DNA primase.
 
  
 0.980
EHO85038.1
Elongation factor 4.
 
 
 0.919
EHO86936.1
Hypothetical protein.
  
 
 0.864
EHO86494.1
Hypothetical protein.
  
 
 0.864
EHO86007.1
Hypothetical protein.
  
 
 0.864
EHO83138.1
Hypothetical protein.
  
 
 0.864
EHO81781.1
Hypothetical protein.
  
 
 0.864
Your Current Organism:
Eubacterium sp. 3131
NCBI taxonomy Id: 457402
Other names: E. sp. 3_1_31, Eubacterium sp. 3_1_31
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