Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EHO84978.1Riboflavin biosynthesis protein RibF. (310 aa)    
Predicted Functional Partners:
EHO84979.1
tRNA pseudouridine synthase B.
  
 0.970
EHO81755.1
Riboflavin synthase, alpha subunit.
    
 0.932
EHO81754.1
GTP cyclohydrolase II.
    
 0.910
EHO84944.1
Cytidylate kinase.
  
 0.813
EHO86418.1
Hypothetical protein.
     
 0.811
EHO84977.1
Hypothetical protein.
       0.791
EHO86002.1
Hypothetical protein.
    
 0.775
EHO81351.1
Hypothetical protein.
    
 0.775
EHO83866.1
Epoxide hydrolase domain-like phosphatase.
  
 
 0.751
EHO82311.1
TIGR02254 family HAD hydrolase.
  
 
 0.751
Your Current Organism:
Eubacterium sp. 3131
NCBI taxonomy Id: 457402
Other names: E. sp. 3_1_31, Eubacterium sp. 3_1_31
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