Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHO85002.1TIGR01212 family radical SAM protein. (316 aa)    
Predicted Functional Partners:
EHO85003.1
Hypothetical protein.
       0.586
EHO83341.1
Hypothetical protein.
 
    0.574
EHO83952.1
Hypothetical protein.
 
    0.500
EHO85001.1
Hypothetical protein.
       0.495
EHO85000.1
DegV family EDD domain-containing protein.
       0.456
EHO83813.1
Hypothetical protein.
 
     0.442
Your Current Organism:
Eubacterium sp. 3131
NCBI taxonomy Id: 457402
Other names: E. sp. 3_1_31, Eubacterium sp. 3_1_31
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