EHO85047.1 protein (Eubacterium sp. 3131) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EHO85047.1

Ribosomal protein S20. (88 aa)

Predicted Functional Partners:

EHO85034.1

0.996

EHO84895.1

0.995

EHO85056.1

0.995

EHO85073.1

0.995

EHO84561.1

0.995

EHO81773.1

0.995

EHO81728.1

0.995

EHO81419.1

0.995

EHO81421.1

0.995

EHO84834.1

0.994

Your Current Organism:

Eubacterium sp. 3131

NCBI taxonomy Id: 457402
Other names: E. sp. 3_1_31, Eubacterium sp. 3_1_31

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHO81419.1	EHO81421.1	HMPREF0984_02272	HMPREF0984_02274	Ribosomal protein S6.	30S ribosomal protein S18.	0.999
EHO81419.1	EHO81728.1	HMPREF0984_02272	HMPREF0984_02080	Ribosomal protein S6.	30S ribosomal protein S10.	0.999
EHO81419.1	EHO81773.1	HMPREF0984_02272	HMPREF0984_02036	Ribosomal protein S6.	Hypothetical protein.	0.999
EHO81419.1	EHO84561.1	HMPREF0984_02272	HMPREF0984_01150	Ribosomal protein S6.	Ribosomal protein L21.	0.994
EHO81419.1	EHO84834.1	HMPREF0984_02272	HMPREF0984_00891	Ribosomal protein S6.	Ribosomal protein S4.	0.998
EHO81419.1	EHO84895.1	HMPREF0984_02272	HMPREF0984_00952	Ribosomal protein S6.	30S ribosomal protein S21.	0.994
EHO81419.1	EHO85034.1	HMPREF0984_02272	HMPREF0984_01091	Ribosomal protein S6.	30S ribosomal protein S15.	0.999
EHO81419.1	EHO85047.1	HMPREF0984_02272	HMPREF0984_01104	Ribosomal protein S6.	Ribosomal protein S20.	0.995
EHO81419.1	EHO85056.1	HMPREF0984_02272	HMPREF0984_01113	Ribosomal protein S6.	Ribosomal protein S2.	0.999
EHO81419.1	EHO85073.1	HMPREF0984_02272	HMPREF0984_01130	Ribosomal protein S6.	30S ribosomal protein S16.	0.999
EHO81421.1	EHO81419.1	HMPREF0984_02274	HMPREF0984_02272	30S ribosomal protein S18.	Ribosomal protein S6.	0.999
EHO81421.1	EHO81728.1	HMPREF0984_02274	HMPREF0984_02080	30S ribosomal protein S18.	30S ribosomal protein S10.	0.996
EHO81421.1	EHO81773.1	HMPREF0984_02274	HMPREF0984_02036	30S ribosomal protein S18.	Hypothetical protein.	0.998
EHO81421.1	EHO84561.1	HMPREF0984_02274	HMPREF0984_01150	30S ribosomal protein S18.	Ribosomal protein L21.	0.995
EHO81421.1	EHO84834.1	HMPREF0984_02274	HMPREF0984_00891	30S ribosomal protein S18.	Ribosomal protein S4.	0.997
EHO81421.1	EHO84895.1	HMPREF0984_02274	HMPREF0984_00952	30S ribosomal protein S18.	30S ribosomal protein S21.	0.994
EHO81421.1	EHO85034.1	HMPREF0984_02274	HMPREF0984_01091	30S ribosomal protein S18.	30S ribosomal protein S15.	0.998
EHO81421.1	EHO85047.1	HMPREF0984_02274	HMPREF0984_01104	30S ribosomal protein S18.	Ribosomal protein S20.	0.995
EHO81421.1	EHO85056.1	HMPREF0984_02274	HMPREF0984_01113	30S ribosomal protein S18.	Ribosomal protein S2.	0.998
EHO81421.1	EHO85073.1	HMPREF0984_02274	HMPREF0984_01130	30S ribosomal protein S18.	30S ribosomal protein S16.	0.997