STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHO83865.123S rRNA (uracil-5-)-methyltransferase RumA. (453 aa)    
Predicted Functional Partners:
EHO83866.1
Epoxide hydrolase domain-like phosphatase.
  
    0.779
EHO83868.1
Hypothetical protein.
       0.600
EHO83867.1
Hypothetical protein.
       0.588
EHO85031.1
tRNA (guanine-N(7)-)-methyltransferase.
 
  
 0.508
EHO80344.1
DNA-directed RNA polymerase, beta' subunit.
   
  
 0.475
EHO80946.1
YraL family putative S-adenosylmethionine-dependent methyltransferase.
 
  
 0.466
EHO85459.1
phenylalanine-tRNA ligase, beta subunit.
 
  
 0.433
EHO83892.1
Ribosomal RNA small subunit methyltransferase B.
 
  
 0.432
EHO83367.1
NOL1/NOP2/sun family putative RNA methylase.
 
  
 0.425
EHO86093.1
Hypothetical protein.
 
  
 0.415
Your Current Organism:
Eubacterium sp. 3131
NCBI taxonomy Id: 457402
Other names: E. sp. 3_1_31, Eubacterium sp. 3_1_31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.