Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHO83872.1Ribonuclease III. (227 aa)    
Predicted Functional Partners:
EHO84851.1
Hypothetical protein.
  
 0.937
EHO84559.1
50S ribosomal protein L27.
  
 
 0.907
EHO81596.1
Ribonuclease P protein component.
 
 
 0.901
EHO85069.1
50S ribosomal protein L19.
 
 0.894
EHO86078.1
Hypothetical protein.
 
 0.893
EHO84922.1
Hypothetical protein.
 
 0.893
EHO85056.1
Ribosomal protein S2.
 
 
 0.892
EHO80647.1
Hypothetical protein.
 
 0.892
EHO81773.1
Hypothetical protein.
   
 
 0.890
EHO81774.1
Ribosomal protein L13.
   
 
 0.886
Your Current Organism:
Eubacterium sp. 3131
NCBI taxonomy Id: 457402
Other names: E. sp. 3_1_31, Eubacterium sp. 3_1_31
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