Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EHO83886.1Ribosome small subunit-dependent GTPase A. (288 aa)    
Predicted Functional Partners:
EHO83884.1
Thiamine pyrophosphokinase.
  
 
 0.956
EHO83887.1
Hypothetical protein.
 
  
 0.956
EHO83885.1
Ribulose-phosphate 3-epimerase.
  
  
 0.922
EHO83888.1
Hypothetical protein.
 
  
 0.900
EHO83889.1
23S rRNA methyltransferase.
  
  
 0.864
EHO85034.1
30S ribosomal protein S15.
  
   0.822
EHO81713.1
30S ribosomal protein S8.
  
 
   0.806
EHO81704.1
30S ribosomal protein S13.
    
   0.797
EHO81710.1
30S ribosomal protein S5.
    
   0.797
EHO81707.1
Adenylate kinase.
     
  0.795
Your Current Organism:
Eubacterium sp. 3131
NCBI taxonomy Id: 457402
Other names: E. sp. 3_1_31, Eubacterium sp. 3_1_31
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