STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHO81584.1serine-tRNA ligase. (428 aa)    
Predicted Functional Partners:
EHO85031.1
tRNA (guanine-N(7)-)-methyltransferase.
   
 0.867
EHO85458.1
phenylalanine-tRNA ligase, alpha subunit.
  
 
 0.821
EHO84107.1
valine-tRNA ligase.
 
  
 0.803
EHO86101.1
Acyl carrier protein.
   
 
 0.799
EHO82328.1
D-alanine-poly(phosphoribitol) ligase, subunit 2.
   
 
 0.799
EHO80459.1
arginine-tRNA ligase.
  
 
 0.776
EHO80465.1
methionine-tRNA ligase.
 
  
 0.757
EHO81132.1
Preprotein translocase, SecG subunit.
 
  
 0.735
EHO85426.1
threonine-tRNA ligase.
  
 
 0.723
EHO85459.1
phenylalanine-tRNA ligase, beta subunit.
  
  
 0.722
Your Current Organism:
Eubacterium sp. 3131
NCBI taxonomy Id: 457402
Other names: E. sp. 3_1_31, Eubacterium sp. 3_1_31
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