Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHO81601.1Transcription-repair coupling factor. (1141 aa)    
Predicted Functional Partners:
EHO83159.1
Excinuclease ABC subunit A.
   
 0.957
EHO81095.1
Excinuclease ABC subunit A.
   
 0.957
EHO84550.1
Holliday junction DNA helicase RuvB.
 
  
 0.932
EHO84551.1
Holliday junction DNA helicase RuvA.
 
  
 0.923
EHO84269.1
Excinuclease ABC subunit C.
  
  
 0.916
EHO80343.1
DNA-directed RNA polymerase, beta subunit.
  
 
 
 0.916
EHO81702.1
DNA-directed RNA polymerase, alpha subunit.
 
 
 
 0.912
EHO80344.1
DNA-directed RNA polymerase, beta' subunit.
  
 
 
 0.912
EHO81600.1
peptidyl-tRNA hydrolase.
  
  
 0.904
EHO80324.1
Excinuclease ABC subunit B.
    
 0.891
Your Current Organism:
Eubacterium sp. 3131
NCBI taxonomy Id: 457402
Other names: E. sp. 3_1_31, Eubacterium sp. 3_1_31
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