STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHO81628.1TatD family hydrolase. (260 aa)    
Predicted Functional Partners:
EHO80465.1
methionine-tRNA ligase.
 
 0.860
EHO81627.1
tRNA modification GTPase TrmE.
 
    0.682
EHO84545.1
Protein-export membrane protein SecD.
 
  
 0.574
EHO81582.1
DNA polymerase III, subunit gamma and tau.
 
   
 0.556
EHO80449.1
GTP-binding protein YchF.
 
 
   0.462
EHO85418.1
6-phosphofructokinase.
 
 
   0.452
EHO82209.1
Putative glycoprotease GCP.
  
   
 0.441
EHO85413.1
DNA polymerase I.
 
   
 0.422
Your Current Organism:
Eubacterium sp. 3131
NCBI taxonomy Id: 457402
Other names: E. sp. 3_1_31, Eubacterium sp. 3_1_31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.