STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHO81209.1RNA polymerase sigma-54 factor. (405 aa)    
Predicted Functional Partners:
EHO81702.1
DNA-directed RNA polymerase, alpha subunit.
  
 0.943
EHO80344.1
DNA-directed RNA polymerase, beta' subunit.
   
 0.941
EHO80343.1
DNA-directed RNA polymerase, beta subunit.
    
 0.940
EHO81210.1
Hypothetical protein.
 
 
 
 0.938
EHO81370.1
Hypothetical protein.
 
  
 0.909
EHO81438.1
Hypothetical protein.
 
 
 
 0.874
EHO80684.1
Hypothetical protein.
 
 
 
 0.868
EHO81599.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.707
EHO84919.1
RNA polymerase sigma factor RpoD.
   
 
 0.683
EHO84099.1
Hypothetical protein.
  
 
 0.672
Your Current Organism:
Eubacterium sp. 3131
NCBI taxonomy Id: 457402
Other names: E. sp. 3_1_31, Eubacterium sp. 3_1_31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.