Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EHL65215.1 | EHL65217.1 | HMPREF1006_00228 | HMPREF1006_00230 | RIP metalloprotease RseP. | Hypothetical protein; Belongs to the CDS family. | 0.936 |
EHL65215.1 | EHL65218.1 | HMPREF1006_00228 | HMPREF1006_00231 | RIP metalloprotease RseP. | Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.976 |
EHL65215.1 | EHL65219.1 | HMPREF1006_00228 | HMPREF1006_00232 | RIP metalloprotease RseP. | uracil-DNA glycosylase, family 4. | 0.812 |
EHL65215.1 | EHL65220.1 | HMPREF1006_00228 | HMPREF1006_00233 | RIP metalloprotease RseP. | Hypothetical protein. | 0.813 |
EHL65215.1 | EHL65222.1 | HMPREF1006_00228 | HMPREF1006_00235 | RIP metalloprotease RseP. | UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. | 0.741 |
EHL65215.1 | EHL65223.1 | HMPREF1006_00228 | HMPREF1006_00236 | RIP metalloprotease RseP. | Hypothetical protein. | 0.730 |
EHL65215.1 | dxr | HMPREF1006_00228 | HMPREF1006_00229 | RIP metalloprotease RseP. | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. | 0.931 |
EHL65215.1 | murA | HMPREF1006_00228 | HMPREF1006_00234 | RIP metalloprotease RseP. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.874 |
EHL65217.1 | EHL65215.1 | HMPREF1006_00230 | HMPREF1006_00228 | Hypothetical protein; Belongs to the CDS family. | RIP metalloprotease RseP. | 0.936 |
EHL65217.1 | EHL65218.1 | HMPREF1006_00230 | HMPREF1006_00231 | Hypothetical protein; Belongs to the CDS family. | Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.990 |
EHL65217.1 | EHL65219.1 | HMPREF1006_00230 | HMPREF1006_00232 | Hypothetical protein; Belongs to the CDS family. | uracil-DNA glycosylase, family 4. | 0.812 |
EHL65217.1 | EHL65220.1 | HMPREF1006_00230 | HMPREF1006_00233 | Hypothetical protein; Belongs to the CDS family. | Hypothetical protein. | 0.839 |
EHL65217.1 | EHL65222.1 | HMPREF1006_00230 | HMPREF1006_00235 | Hypothetical protein; Belongs to the CDS family. | UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. | 0.753 |
EHL65217.1 | EHL65223.1 | HMPREF1006_00230 | HMPREF1006_00236 | Hypothetical protein; Belongs to the CDS family. | Hypothetical protein. | 0.762 |
EHL65217.1 | dxr | HMPREF1006_00230 | HMPREF1006_00229 | Hypothetical protein; Belongs to the CDS family. | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. | 0.971 |
EHL65217.1 | murA | HMPREF1006_00230 | HMPREF1006_00234 | Hypothetical protein; Belongs to the CDS family. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.763 |
EHL65218.1 | EHL65215.1 | HMPREF1006_00231 | HMPREF1006_00228 | Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | RIP metalloprotease RseP. | 0.976 |
EHL65218.1 | EHL65217.1 | HMPREF1006_00231 | HMPREF1006_00230 | Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | Hypothetical protein; Belongs to the CDS family. | 0.990 |
EHL65218.1 | EHL65219.1 | HMPREF1006_00231 | HMPREF1006_00232 | Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | uracil-DNA glycosylase, family 4. | 0.812 |
EHL65218.1 | EHL65220.1 | HMPREF1006_00231 | HMPREF1006_00233 | Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | Hypothetical protein. | 0.816 |
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