Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EHL64529.1 | EHL64530.1 | HMPREF1006_00814 | HMPREF1006_00815 | Protease Do. | Hypothetical protein. | 0.536 |
EHL64529.1 | EHL65025.1 | HMPREF1006_00814 | HMPREF1006_00557 | Protease Do. | Hypothetical protein; Belongs to the Nudix hydrolase family. | 0.616 |
EHL64529.1 | EHL66899.1 | HMPREF1006_00814 | HMPREF1006_01392 | Protease Do. | Hypothetical protein. | 0.536 |
EHL64529.1 | EHL67793.1 | HMPREF1006_00814 | HMPREF1006_01234 | Protease Do. | Hypothetical protein. | 0.531 |
EHL64529.1 | alaS | HMPREF1006_00814 | HMPREF1006_00566 | Protease Do. | alanine-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.841 |
EHL64529.1 | glpK | HMPREF1006_00814 | HMPREF1006_00717 | Protease Do. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.950 |
EHL64529.1 | lysA | HMPREF1006_00814 | HMPREF1006_00115 | Protease Do. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.885 |
EHL64529.1 | rplK | HMPREF1006_00814 | HMPREF1006_02789 | Protease Do. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.595 |
EHL64529.1 | rplY | HMPREF1006_00814 | HMPREF1006_02633 | Protease Do. | Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.629 |
EHL64529.1 | secY | HMPREF1006_00814 | HMPREF1006_01628 | Protease Do. | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.507 |
EHL64530.1 | EHL64529.1 | HMPREF1006_00815 | HMPREF1006_00814 | Hypothetical protein. | Protease Do. | 0.536 |
EHL65025.1 | EHL64529.1 | HMPREF1006_00557 | HMPREF1006_00814 | Hypothetical protein; Belongs to the Nudix hydrolase family. | Protease Do. | 0.616 |
EHL65025.1 | alaS | HMPREF1006_00557 | HMPREF1006_00566 | Hypothetical protein; Belongs to the Nudix hydrolase family. | alanine-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.458 |
EHL66899.1 | EHL64529.1 | HMPREF1006_01392 | HMPREF1006_00814 | Hypothetical protein. | Protease Do. | 0.536 |
EHL67793.1 | EHL64529.1 | HMPREF1006_01234 | HMPREF1006_00814 | Hypothetical protein. | Protease Do. | 0.531 |
EHL67793.1 | rplK | HMPREF1006_01234 | HMPREF1006_02789 | Hypothetical protein. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.909 |
alaS | EHL64529.1 | HMPREF1006_00566 | HMPREF1006_00814 | alanine-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Protease Do. | 0.841 |
alaS | EHL65025.1 | HMPREF1006_00566 | HMPREF1006_00557 | alanine-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Hypothetical protein; Belongs to the Nudix hydrolase family. | 0.458 |
alaS | glpK | HMPREF1006_00566 | HMPREF1006_00717 | alanine-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.945 |
glpK | EHL64529.1 | HMPREF1006_00717 | HMPREF1006_00814 | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | Protease Do. | 0.950 |
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