Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EHL64444.1 | EHL67918.1 | HMPREF1006_00729 | HMPREF1006_02630 | Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | Hypothetical protein; Belongs to the Fur family. | 0.483 |
EHL64444.1 | rpoA | HMPREF1006_00729 | HMPREF1006_01637 | Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
EHL64444.1 | rpoB | HMPREF1006_00729 | HMPREF1006_01600 | Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
EHL64444.1 | sigA | HMPREF1006_00729 | HMPREF1006_00631 | Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.956 |
EHL64528.1 | EHL65378.1 | HMPREF1006_00813 | HMPREF1006_00391 | Hypothetical protein. | Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | 0.741 |
EHL64528.1 | EHL67918.1 | HMPREF1006_00813 | HMPREF1006_02630 | Hypothetical protein. | Hypothetical protein; Belongs to the Fur family. | 0.611 |
EHL65378.1 | EHL64528.1 | HMPREF1006_00391 | HMPREF1006_00813 | Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | Hypothetical protein. | 0.741 |
EHL65378.1 | EHL67918.1 | HMPREF1006_00391 | HMPREF1006_02630 | Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | Hypothetical protein; Belongs to the Fur family. | 0.626 |
EHL67916.1 | EHL67917.1 | HMPREF1006_02628 | HMPREF1006_02629 | Hypothetical protein. | Hypothetical protein. | 0.468 |
EHL67916.1 | EHL67918.1 | HMPREF1006_02628 | HMPREF1006_02630 | Hypothetical protein. | Hypothetical protein; Belongs to the Fur family. | 0.429 |
EHL67917.1 | EHL67916.1 | HMPREF1006_02629 | HMPREF1006_02628 | Hypothetical protein. | Hypothetical protein. | 0.468 |
EHL67917.1 | EHL67918.1 | HMPREF1006_02629 | HMPREF1006_02630 | Hypothetical protein. | Hypothetical protein; Belongs to the Fur family. | 0.827 |
EHL67917.1 | glmU | HMPREF1006_02629 | HMPREF1006_02631 | Hypothetical protein. | UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | 0.442 |
EHL67918.1 | EHL64444.1 | HMPREF1006_02630 | HMPREF1006_00729 | Hypothetical protein; Belongs to the Fur family. | Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.483 |
EHL67918.1 | EHL64528.1 | HMPREF1006_02630 | HMPREF1006_00813 | Hypothetical protein; Belongs to the Fur family. | Hypothetical protein. | 0.611 |
EHL67918.1 | EHL65378.1 | HMPREF1006_02630 | HMPREF1006_00391 | Hypothetical protein; Belongs to the Fur family. | Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | 0.626 |
EHL67918.1 | EHL67916.1 | HMPREF1006_02630 | HMPREF1006_02628 | Hypothetical protein; Belongs to the Fur family. | Hypothetical protein. | 0.429 |
EHL67918.1 | EHL67917.1 | HMPREF1006_02630 | HMPREF1006_02629 | Hypothetical protein; Belongs to the Fur family. | Hypothetical protein. | 0.827 |
EHL67918.1 | EHL68574.1 | HMPREF1006_02630 | HMPREF1006_02769 | Hypothetical protein; Belongs to the Fur family. | Hypothetical protein. | 0.530 |
EHL67918.1 | glmU | HMPREF1006_02630 | HMPREF1006_02631 | Hypothetical protein; Belongs to the Fur family. | UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | 0.438 |
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