Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EHL64386.1 | alaS | HMPREF1006_00671 | HMPREF1006_00566 | phenylalanine-tRNA ligase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | alanine-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.418 |
EHL64386.1 | glyQ | HMPREF1006_00671 | HMPREF1006_02644 | phenylalanine-tRNA ligase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | glycyl-tRNA synthetase alpha subunit. | 0.707 |
EHL64386.1 | glyS | HMPREF1006_00671 | HMPREF1006_02645 | phenylalanine-tRNA ligase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | glycine-tRNA ligase, beta subunit. | 0.481 |
EHL64386.1 | guaA | HMPREF1006_00671 | HMPREF1006_00638 | phenylalanine-tRNA ligase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | GMP synthase (glutamine-hydrolyzing) domain-containing protein; Catalyzes the synthesis of GMP from XMP. | 0.575 |
EHL64386.1 | hisS | HMPREF1006_00671 | HMPREF1006_00978 | phenylalanine-tRNA ligase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | histidine-tRNA ligase. | 0.454 |
EHL67926.1 | EHL67927.1 | HMPREF1006_02638 | HMPREF1006_02639 | Hypothetical protein. | Hypothetical protein. | 0.836 |
EHL67926.1 | EHL67931.1 | HMPREF1006_02638 | HMPREF1006_02643 | Hypothetical protein. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.969 |
EHL67926.1 | era | HMPREF1006_02638 | HMPREF1006_02642 | Hypothetical protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.898 |
EHL67926.1 | glyQ | HMPREF1006_02638 | HMPREF1006_02644 | Hypothetical protein. | glycyl-tRNA synthetase alpha subunit. | 0.680 |
EHL67926.1 | glyS | HMPREF1006_02638 | HMPREF1006_02645 | Hypothetical protein. | glycine-tRNA ligase, beta subunit. | 0.680 |
EHL67926.1 | ybeY | HMPREF1006_02638 | HMPREF1006_02640 | Hypothetical protein. | Metalloprotein, YbeY/UPF0054family; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.989 |
EHL67927.1 | EHL67926.1 | HMPREF1006_02639 | HMPREF1006_02638 | Hypothetical protein. | Hypothetical protein. | 0.836 |
EHL67927.1 | EHL67931.1 | HMPREF1006_02639 | HMPREF1006_02643 | Hypothetical protein. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.828 |
EHL67927.1 | era | HMPREF1006_02639 | HMPREF1006_02642 | Hypothetical protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.794 |
EHL67927.1 | glyQ | HMPREF1006_02639 | HMPREF1006_02644 | Hypothetical protein. | glycyl-tRNA synthetase alpha subunit. | 0.681 |
EHL67927.1 | glyS | HMPREF1006_02639 | HMPREF1006_02645 | Hypothetical protein. | glycine-tRNA ligase, beta subunit. | 0.680 |
EHL67927.1 | ybeY | HMPREF1006_02639 | HMPREF1006_02640 | Hypothetical protein. | Metalloprotein, YbeY/UPF0054family; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.874 |
EHL67931.1 | EHL67926.1 | HMPREF1006_02643 | HMPREF1006_02638 | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | Hypothetical protein. | 0.969 |
EHL67931.1 | EHL67927.1 | HMPREF1006_02643 | HMPREF1006_02639 | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | Hypothetical protein. | 0.828 |
EHL67931.1 | era | HMPREF1006_02643 | HMPREF1006_02642 | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.944 |
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