Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBFG_02090ABC transporter, solute-binding protein. (445 aa)    
Predicted Functional Partners:
CBFG_02089
ABC transporter, permease protein.
 
  0.990
CBFG_02088
ABC transporter, permease protein.
 
  0.906
CBFG_02210
ABC transporter, permease protein.
  
  0.783
CBFG_04802
ABC transporter, permease protein.
  
  0.771
CBFG_04149
ABC transporter, permease protein.
  
  0.765
CBFG_05346
Putative L-arabinose transport system permease protein AraP.
  
  0.758
CBFG_01644
ABC transporter, permease protein.
  
 
 0.755
CBFG_00622
ABC transporter, permease protein.
  
  0.743
CBFG_01809
ABC transporter, permease protein.
  
  0.736
CBFG_05071
ABC transporter, permease protein.
  
  0.729
Your Current Organism:
Clostridiales bacterium 1747FAA
NCBI taxonomy Id: 457421
Other names: C. bacterium 1_7_47FAA, Clostridiales bacterium 1_7_47FAA
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