Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBFG_02498Amidohydrolase family protein. (239 aa)    
Predicted Functional Partners:
CBFG_02499
Amidohydrolase family protein.
 
    
0.826
CBFG_02497
SIS domain protein.
       0.773
CBFG_02500
SIS domain protein.
       0.737
CBFG_02501
PTS system, Lactose/Cellobiose specific IIA subunit.
       0.737
CBFG_05994
Amidohydrolase family protein.
  
     0.711
CBFG_04609
Amidohydrolase family protein.
  
     0.686
CBFG_02496
Transcriptional regulator, DeoR family.
       0.590
CBFG_03793
Amidohydrolase family protein.
 
  
0.514
CBFG_02225
Hypothetical protein; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.481
CBFG_02227
Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
  
     0.460
Your Current Organism:
Clostridiales bacterium 1747FAA
NCBI taxonomy Id: 457421
Other names: C. bacterium 1_7_47FAA, Clostridiales bacterium 1_7_47FAA
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