Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBFG_02765Sigma-54 interaction domain protein. (642 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor.
 
  
 0.839
CBFG_04000
Putative RNA polymerase sigma-54 factor.
 
  
 0.839
CBFG_02766
Hypothetical protein.
       0.773
CBFG_05493
Hypothetical protein.
    
 0.772
CBFG_00745
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.
    
 0.757
CBFG_01378
PAS domain S-box protein.
    
 0.757
CBFG_02984
Hypothetical protein.
    
 0.757
CBFG_05434
PAS domain S-box protein.
    
 0.757
CBFG_05436
PAS domain S-box protein.
    
 0.757
ribA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
  0.721
Your Current Organism:
Clostridiales bacterium 1747FAA
NCBI taxonomy Id: 457421
Other names: C. bacterium 1_7_47FAA, Clostridiales bacterium 1_7_47FAA
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