CBFG_03429 protein (Clostridiales bacterium 1747FAA)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CBFG_03429

ABC transporter, permease protein. (554 aa)

Predicted Functional Partners:

fbpC-2

0.986

CBFG_03431

0.976

CBFG_03419

0.959

CBFG_04396

0.957

CBFG_03416

0.950

CBFG_04399

0.909

fbpC

0.892

CBFG_04138

0.882

CBFG_04397

0.848

CBFG_03427

0.846

Your Current Organism:

Clostridiales bacterium 1747FAA

NCBI taxonomy Id: 457421
Other names: C. bacterium 1_7_47FAA, Clostridiales bacterium 1_7_47FAA

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBFG_03416	CBFG_03419	CBFG_03416	CBFG_03419	ABC transporter, solute-binding protein.	ABC transporter, solute-binding protein.	0.593
CBFG_03416	CBFG_03429	CBFG_03416	CBFG_03429	ABC transporter, solute-binding protein.	ABC transporter, permease protein.	0.950
CBFG_03416	CBFG_04138	CBFG_03416	CBFG_04138	ABC transporter, solute-binding protein.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.553
CBFG_03416	CBFG_04397	CBFG_03416	CBFG_04397	ABC transporter, solute-binding protein.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.578
CBFG_03416	CBFG_04399	CBFG_03416	CBFG_04399	ABC transporter, solute-binding protein.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.612
CBFG_03416	fbpC	CBFG_03416	CBFG_03418	ABC transporter, solute-binding protein.	ABC transporter, ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	0.814
CBFG_03416	fbpC-2	CBFG_03416	CBFG_03430	ABC transporter, solute-binding protein.	ABC transporter, ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	0.608
CBFG_03419	CBFG_03416	CBFG_03419	CBFG_03416	ABC transporter, solute-binding protein.	ABC transporter, solute-binding protein.	0.593
CBFG_03419	CBFG_03427	CBFG_03419	CBFG_03427	ABC transporter, solute-binding protein.	Response regulator receiver domain protein.	0.623
CBFG_03419	CBFG_03429	CBFG_03419	CBFG_03429	ABC transporter, solute-binding protein.	ABC transporter, permease protein.	0.959
CBFG_03419	CBFG_04138	CBFG_03419	CBFG_04138	ABC transporter, solute-binding protein.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.544
CBFG_03419	CBFG_04397	CBFG_03419	CBFG_04397	ABC transporter, solute-binding protein.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.603
CBFG_03419	CBFG_04399	CBFG_03419	CBFG_04399	ABC transporter, solute-binding protein.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.598
CBFG_03419	fbpC	CBFG_03419	CBFG_03418	ABC transporter, solute-binding protein.	ABC transporter, ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	0.880
CBFG_03419	fbpC-2	CBFG_03419	CBFG_03430	ABC transporter, solute-binding protein.	ABC transporter, ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	0.758
CBFG_03427	CBFG_03419	CBFG_03427	CBFG_03419	Response regulator receiver domain protein.	ABC transporter, solute-binding protein.	0.623
CBFG_03427	CBFG_03429	CBFG_03427	CBFG_03429	Response regulator receiver domain protein.	ABC transporter, permease protein.	0.846
CBFG_03427	CBFG_03431	CBFG_03427	CBFG_03431	Response regulator receiver domain protein.	ABC transporter, solute-binding protein.	0.774
CBFG_03427	fbpC-2	CBFG_03427	CBFG_03430	Response regulator receiver domain protein.	ABC transporter, ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	0.646
CBFG_03429	CBFG_03416	CBFG_03429	CBFG_03416	ABC transporter, permease protein.	ABC transporter, solute-binding protein.	0.950