Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBFG_03460SCP-like protein. (276 aa)    
Predicted Functional Partners:
CBFG_04114
Repeat protein.
  
 
  0.782
CBFG_03718
Hypothetical protein.
  
    0.580
CBFG_03461
Putative sortase, SrtB family.
       0.546
CBFG_02913
Beta-lactamase.
  
 
  0.538
CBFG_03261
NeuB family protein.
     
  0.530
CBFG_00074
Beta-lactamase.
   
 
  0.526
cotJC-2
cotJC protein.
  
     0.476
cotJC
cotJC protein.
  
     0.468
CBFG_03459
Hypothetical protein.
       0.468
CBFG_01878
Putative cotJB protein.
  
     0.458
Your Current Organism:
Clostridiales bacterium 1747FAA
NCBI taxonomy Id: 457421
Other names: C. bacterium 1_7_47FAA, Clostridiales bacterium 1_7_47FAA
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