Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CBFG_04464Putative oligopeptide ABC transporter, permease protein AppC. (302 aa)    
Predicted Functional Partners:
CBFG_04463
ABC transporter, permease protein.
 
 0.986
dppD-2
Dipeptide ABC transporter, ATP-binding protein DppD; Belongs to the ABC transporter superfamily.
 0.983
appF-4
Oligopeptide ABC transporter, ATP-binding protein AppF; Belongs to the ABC transporter superfamily.
 0.983
CBFG_04475
Putative phosphonate C-P lyase system protein PhnK; Belongs to the ABC transporter superfamily.
 0.970
dppD-4
Dipeptide ABC transporter, ATP-binding protein DppD; Belongs to the ABC transporter superfamily.
 0.950
CBFG_04462
ABC transporter, substrate-binding protein, family 5.
 
 0.945
CBFG_00705
ABC transporter, permease protein.
 
 0.942
gsiC
Glutathione ABC transporter, permease protein GsiC.
 
 0.942
gsiC-2
Glutathione ABC transporter, permease protein GsiC.
 
 0.942
CBFG_04473
ABC transporter, permease protein.
 
 0.942
Your Current Organism:
Clostridiales bacterium 1747FAA
NCBI taxonomy Id: 457421
Other names: C. bacterium 1_7_47FAA, Clostridiales bacterium 1_7_47FAA
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