Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBFG_04598Hypothetical protein. (329 aa)    
Predicted Functional Partners:
CBFG_04597
Transporter, major facilitator family protein.
 
    0.774
nifJ
Pyruvate synthase.
    
  0.763
CBFG_00777
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.
     
  0.740
CBFG_03336
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.
     
  0.740
nifJ-2
Pyruvate synthase.
    
  0.710
CBFG_00118
PTS system, beta-glucoside-specific, IIABC component.
     
  0.643
CBFG_00142
Phosphotransferase system, EIIC.
     
  0.643
CBFG_00373
PTS system sucrose-specific IIBC component.
     
  0.643
CBFG_00568
Phosphotransferase system, EIIC.
     
  0.643
CBFG_00590
PTS system, beta-glucoside-specific, IIABC component.
     
  0.643
Your Current Organism:
Clostridiales bacterium 1747FAA
NCBI taxonomy Id: 457421
Other names: C. bacterium 1_7_47FAA, Clostridiales bacterium 1_7_47FAA
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