CBFG_05058 protein (Clostridiales bacterium 1747FAA)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CBFG_05058

Putative sigma-E processing peptidase SpoIIGA. (281 aa)

Predicted Functional Partners:

CBFG_02845

0.964

sigE

0.931

spoIIAB

0.928

sigG

0.868

spoIIR

0.862

CBFG_01238

0.858

CBFG_05325

0.835

CBFG_05288

0.831

spoIIP

0.826

spoIIID

0.818

Your Current Organism:

Clostridiales bacterium 1747FAA

NCBI taxonomy Id: 457421
Other names: C. bacterium 1_7_47FAA, Clostridiales bacterium 1_7_47FAA

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBFG_01238	CBFG_02845	CBFG_01238	CBFG_02845	Stage III sporulation protein AA.	Putative stage II sporulation protein E.	0.836
CBFG_01238	CBFG_05058	CBFG_01238	CBFG_05058	Stage III sporulation protein AA.	Putative sigma-E processing peptidase SpoIIGA.	0.858
CBFG_01238	CBFG_05288	CBFG_01238	CBFG_05288	Stage III sporulation protein AA.	Putative anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.	0.800
CBFG_01238	CBFG_05325	CBFG_01238	CBFG_05325	Stage III sporulation protein AA.	Putative sporulation protein YqfD.	0.813
CBFG_01238	sigE	CBFG_01238	CBFG_05059	Stage III sporulation protein AA.	RNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.773
CBFG_01238	sigG	CBFG_01238	CBFG_05063	Stage III sporulation protein AA.	RNA polymerase sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.783
CBFG_01238	spoIIAB	CBFG_01238	CBFG_05289	Stage III sporulation protein AA.	Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.	0.819
CBFG_01238	spoIIID	CBFG_01238	CBFG_04798	Stage III sporulation protein AA.	Sporulation transcriptional regulator SpoIIID.	0.866
CBFG_01238	spoIIP	CBFG_01238	CBFG_03919	Stage III sporulation protein AA.	Stage II sporulation protein P (SpoIIP).	0.851
CBFG_01238	spoIIR	CBFG_01238	CBFG_02261	Stage III sporulation protein AA.	Stage II sporulation protein R.	0.849
CBFG_02845	CBFG_01238	CBFG_02845	CBFG_01238	Putative stage II sporulation protein E.	Stage III sporulation protein AA.	0.836
CBFG_02845	CBFG_05058	CBFG_02845	CBFG_05058	Putative stage II sporulation protein E.	Putative sigma-E processing peptidase SpoIIGA.	0.964
CBFG_02845	CBFG_05288	CBFG_02845	CBFG_05288	Putative stage II sporulation protein E.	Putative anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.	0.863
CBFG_02845	CBFG_05325	CBFG_02845	CBFG_05325	Putative stage II sporulation protein E.	Putative sporulation protein YqfD.	0.772
CBFG_02845	sigE	CBFG_02845	CBFG_05059	Putative stage II sporulation protein E.	RNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.779
CBFG_02845	sigG	CBFG_02845	CBFG_05063	Putative stage II sporulation protein E.	RNA polymerase sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.858
CBFG_02845	spoIIAB	CBFG_02845	CBFG_05289	Putative stage II sporulation protein E.	Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.	0.888
CBFG_02845	spoIIID	CBFG_02845	CBFG_04798	Putative stage II sporulation protein E.	Sporulation transcriptional regulator SpoIIID.	0.867
CBFG_02845	spoIIP	CBFG_02845	CBFG_03919	Putative stage II sporulation protein E.	Stage II sporulation protein P (SpoIIP).	0.863
CBFG_02845	spoIIR	CBFG_02845	CBFG_02261	Putative stage II sporulation protein E.	Stage II sporulation protein R.	0.865