STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL20298.1phytanoyl-CoA dioxygenase (PhyH) superfamily protein. (276 aa)    
Predicted Functional Partners:
EFL20297.1
AraC family transcriptional regulator.
 
     0.947
EFL20299.1
Hypothetical protein.
       0.820
EFL29345.1
Hypothetical protein.
  
     0.656
EFL21262.1
PE-PGRS family protein.
  
     0.643
EFL20350.1
LigA protein.
 
     0.617
ectC
Ectoine synthase; Catalyzes the circularization of gamma-N-acetyl-alpha,gamma- diaminobutyric acid (ADABA) to ectoine (1,4,5,6-tetrahydro-2-methyl-4- pyrimidine carboxylic acid), which is an excellent osmoprotectant.
    
 0.612
EFL23791.1
PE-PGRS family protein.
  
     0.597
EFL23789.1
Conserved hypothetical protein.
  
     0.585
EFL26687.1
Conserved hypothetical protein.
  
     0.497
EFL28807.1
Putative ABC-type sulfonate transport system.
  
     0.480
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.