STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL20420.1Putative ribosylglycohydrolase (putative secreted protein). (308 aa)    
Predicted Functional Partners:
EFL24562.1
Putative membrane protein.
    
 0.947
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
   
  0.875
EFL28265.1
Putative LigA.
   
 0.845
EFL27032.1
Putative serine/threonine protein kinase.
  
 0.843
EFL22341.1
Conserved hypothetical protein.
  
 0.839
EFL20307.1
Putative WD-40 repeat protein.
   
 0.824
EFL20386.1
WD-40 repeat protein.
   
 0.824
EFL22024.1
PE-PGRS family protein.
   
 0.824
EFL24100.1
WD-40 repeat protein.
   
 0.824
EFL25314.1
Conserved hypothetical protein; Truncated CDS.
   
 0.824
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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