STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL20448.1Putative transcriptional regulator, LysR family. (344 aa)    
Predicted Functional Partners:
EFL20447.1
Alpha/beta hydrolase.
 
     0.829
EFL28251.1
Non-ribosomal peptide synthetase.
  
     0.653
EFL27290.1
Putative ATPase; Truncated CDS; unextendable partial coding region.
  
     0.554
EFL22111.1
Periplasmic sensor signal transduction histidine kinase.
  
     0.529
EFL23889.1
Putative sodium-coupled permease; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.516
EFL23567.1
Conserved hypothetical protein.
  
     0.506
EFL29328.1
Putative WD-40 repeat protein.
  
     0.503
EFL20928.1
PE-PGRS family protein.
  
     0.482
EFL29161.1
Putative terpene synthase family, metal binding domain protein.
  
     0.480
EFL20925.1
Collagen alpha-1(III) chain.
  
     0.478
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.