STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL20818.1Putative LuxR-family transcriptional regulator. (230 aa)    
Predicted Functional Partners:
EFL20817.1
LigA protein.
 
 
   0.943
EFL20821.1
Putative transcriptional regulator, LuxR family.
 
  0.888
EFL28870.1
Putative transcriptional regulator, LuxR family.
 
  0.831
EFL20819.1
Putative transcriptional regulator, LuxR family.
 
 
   0.818
EFL28873.1
Putative transcriptional regulator, LuxR family.
 
 
   0.807
EFL28869.1
Conserved hypothetical protein.
 
  0.755
EFL26015.1
LuxR-family transcriptional regulator.
  
 
   0.708
EFL28872.1
Tetratricopeptide repeat (3 repeats)-containing protein; Unextendable partial coding region.
 
     0.698
EFL20768.1
Polyketide synthase.
  
   
 0.690
EFL20815.1
Modular polyketide synthase; Overlaps another CDS with the same product name.
 
   
 0.689
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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