Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL20928.1PE-PGRS family protein. (602 aa)    
Predicted Functional Partners:
EFL20929.1
Hypothetical protein.
       0.806
EFL20927.1
Putative ATP/GTP-binding protein.
 
     0.750
EFL24032.1
Radical SAM.
     0.724
EFL24033.1
Putative ATP/GTP-binding protein.
  
     0.721
EFL23293.1
Putative ATP/GTP-binding protein.
 
     0.692
EFL20925.1
Collagen alpha-1(III) chain.
  
     0.636
EFL20493.1
ABC transporter, permease/ATP-binding protein.
 
     0.576
EFL20930.1
Putative lipoprotein.
 
     0.550
arcA
Arginine deiminase.
       0.550
EFL27317.1
Putative transcriptional regulator, LysR family.
  
     0.544
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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