STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL20955.1FG-GAP repeat domain-containing protein. (350 aa)    
Predicted Functional Partners:
EFL20956.1
GntR family transcriptional regulator.
       0.565
EFL22394.1
Translation initiation factor IF-2.
  
     0.554
EFL20431.1
Conserved hypothetical protein.
  
     0.547
EFL24758.1
Putative secreted protein.
  
  
  0.478
EFL29352.1
Leucine rich repeat variant (3 repeats).
  
     0.463
EFL26421.1
Putative secreted protein.
 
     0.457
EFL27104.1
Putative pectate lyase.
  
     0.439
EFL23120.1
Putative FG-GAP repeat protein.
  
     0.429
EFL27179.1
Putative lipase.
  
     0.422
EFL25378.1
Conserved hypothetical protein.
  
     0.409
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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