STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL21036.1HhH-GPD family base excision DNA repair protein; Truncated CDS. (132 aa)    
Predicted Functional Partners:
EFL22410.1
Exodeoxyribonuclease III.
  
 0.911
EFL23743.1
Exodeoxyribonuclease III.
  
 0.911
EFL24586.1
Endonuclease/exonuclease/phosphatase.
  
 0.911
nfo
Apurinic endonuclease (APN1); Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.
  
 
 0.705
EFL20690.1
Putative formamidopyrimidine-DNA glycosylase; Unextendable partial coding region.
  
  
 0.672
EFL20647.1
Integral membrane protein.
 
     0.658
EFL21037.1
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
       0.605
EFL24852.1
Conserved hypothetical protein.
       0.605
EFL29366.1
Cupin superfamily protein (DUF985).
       0.605
EFL21039.1
Putative DNA ligase.
 
   
 0.594
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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