STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL21040.1DNA polymerase LigD, polymerase domain protein. (334 aa)    
Predicted Functional Partners:
EFL21039.1
Putative DNA ligase.
  
 0.993
ku
Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
  
 0.907
EFL23867.1
DNA ligase, ATP-dependent.
  
 0.880
EFL23869.1
DNA polymerase LigD, polymerase domain protein.
 
  
 
0.818
EFL21041.1
AraC family transcriptional regulator.
       0.678
EFL24576.1
DNA ligase I, ATP-dependent (Dnl1); Truncated CDS.
 
  
 0.653
EFL27407.1
Probable 5'-3' exonuclease.
  
   
 0.501
EFL20649.1
Cell division topological specificity factor MinE.
 
   
 0.468
EFL29071.1
X family DNA polymerase; Unextendable partial coding region.
 
   
 0.467
EFL20934.1
Sensor histidine kinase.
 
    0.441
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.