Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EFL21159.1YbaK/prolyl-tRNA synthetase associated region. (184 aa)    
Predicted Functional Partners:
EFL21160.1
cro/CI family transcriptional regulator.
       0.824
EFL21161.1
Putative integral membrane protein; Unextendable partial coding region.
       0.734
EFL21162.1
Putative bacterial transferase hexapeptide repeat protein.
       0.701
EFL20707.1
Putative sugar acetyltransferase.
       0.572
EFL23776.1
Putative secreted protein.
    
   0.572
EFL26937.1
PPOX class probable F420-dependent enzyme.
 
     0.558
rbpA-2
Electron transporter; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.506
EFL26979.1
Conserved hypothetical protein.
 
     0.463
EFL21602.1
Conserved hypothetical protein.
  
     0.444
aspS
aspartate-tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
    
 0.435
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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