Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL21201.1Senescence marker protein-30 family protein. (298 aa)    
Predicted Functional Partners:
EFL25386.1
Shikimate kinase.
 
  
 0.502
EFL27772.1
Oxidoreductase.
  
 
  0.471
EFL21202.1
GntR family transcriptional regulator.
       0.467
EFL26435.1
Galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
  0.467
EFL28527.1
Conserved hypothetical protein.
  
  
  0.443
EFL20389.1
D-isomer specific 2-hydroxyacid dehydrogenase.
  
 
 0.424
EFL28848.1
Starvation-sensing protein RspA.
 
  
  0.416
EFL28509.1
Starvation sensing protein; Unextendable partial coding region.
 
  
  0.412
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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