STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL21256.1TetR family transcriptional regulator. (208 aa)    
Predicted Functional Partners:
EFL21255.1
Probable 3-hydroxyacyl-CoA dehydrogenase protein.
 
    0.743
EFL23860.1
Putative thioesterase.
 
    0.577
EFL27664.1
Probable transcriptional regulator.
  
     0.557
EFL21253.1
Putative acyl-CoA synthetase.
 
     0.548
EFL23858.1
Conserved hypothetical protein.
 
     0.484
EFL29107.1
Putative transcriptional regulator.
  
     0.476
EFL21252.1
carnitinyl-CoA dehydratase.
       0.461
EFL21254.1
acyl-CoA dehydrogenase.
       0.461
lcdH
3-hydroxyacyl-CoA dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
     0.426
EFL21257.1
GntR family transcriptional regulator.
       0.405
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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