STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL21296.1Phytoene dehydrogenase (Phytoene desaturase); Unextendable partial coding region. (123 aa)    
Predicted Functional Partners:
EFL21293.1
Putative lycopene cyclase.
 
 
 0.995
EFL22054.1
Squalene synthase HpnD.
 
 
 0.991
EFL22055.1
Squalene synthase HpnC.
 
 
 0.911
EFL21294.1
Putative beta-carotene desaturase/methylase.
 
  
 0.902
EFL20343.1
Putative mucin-2 (MUC-2) (Intestinal mucin-2); truncated CDS; Belongs to the FPP/GGPP synthase family.
  
 
 0.801
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
 
  
 0.799
EFL26843.1
Putative phytoene dehydrogenase.
 
  
  0.790
EFL27124.1
Putative magnesium chelatase; Unextendable partial coding region.
 
 
 0.785
EFL27123.1
Subunit D/I family magnesium chelatase.
 
 
 0.765
EFL21295.1
Methylesterase.
 
   
 0.733
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.