Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL21323.1LigA protein. (1130 aa)    
Predicted Functional Partners:
EFL28540.1
Spore-associated protein A.
  
     0.577
EFL26104.1
PE-PGRS family protein.
  
    0.536
EFL22584.1
Conserved hypothetical protein.
  
     0.518
EFL24875.1
LigA protein.
  
     0.504
EFL26424.1
Putative transcriptional regulator, GntR family.
  
     0.497
EFL26585.1
N-acetymuramyl-L-alanine amidase-related protein.
  
  
 0.490
EFL23931.1
Regulatory protein AfsR.
  
     0.478
EFL27064.1
Conserved hypothetical protein.
  
     0.468
EFL29327.1
Regulatory protein AfsR.
  
     0.458
EFL21555.1
Putative integral membrane protein.
  
     0.448
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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