STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL21655.1Choline dehydrogenase. (523 aa)    
Predicted Functional Partners:
EFL24122.1
Ferredoxin oxidoreductase, alpha subunit.
     
  0.664
EFL20517.1
Aldehyde dehydrogenase (NAD) family protein; Belongs to the aldehyde dehydrogenase family.
   
 
 0.652
EFL22886.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.635
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
  0.587
EFL23032.1
Putative glycine-sarcosine methyltransferase.
     
  0.587
EFL25580.1
Phospholipase C.
     
  0.587
EFL25858.1
Phosphoesterase.
     
  0.587
EFL26213.1
Translation initiation factor IF-2.
     
  0.587
EFL22310.1
Putative secreted protein.
   
   0.562
EFL26791.1
Cytochrome c family protein.
   
   0.562
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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