STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL21722.1Putative GntR-family transcriptional regulator. (320 aa)    
Predicted Functional Partners:
EFL21723.1
Transcriptional regulator/aminotransferase.
     0.975
EFL21724.1
Putative integral membrane protein.
 
     0.819
EFL26930.1
Glutamate synthase large subunit.
   
 
  0.715
rbpA
Putative membrane-associated GTPase; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
       0.692
EFL21377.1
Glycine dehydrogenase; Truncated CDS; Belongs to the GcvP family.
   
 
 0.686
EFL23292.1
Oxoglutarate dehydrogenase (succinyl-transferring), E1 component.
   
 
 0.653
EFL21630.1
Non-ribosomal peptide synthetase.
  
 
 0.620
EFL27919.1
Nonribosomal peptide synthetase DhbF.
   
 
 0.592
EFL28206.1
Dimodular nonribosomal peptide synthetase.
   
 
 0.592
EFL20483.1
Oxidoreductase, FAD-binding.
     
  0.570
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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