STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL21776.1Lysine monooxygenase. (569 aa)    
Predicted Functional Partners:
EFL21777.1
Delta-aminovaleramide aminohydrolase.
 
 
 0.969
EFL24232.1
Acetoin utilization protein AcuC.
   
 0.946
EFL28954.1
SNF2/helicase domain protein.
    
 0.941
EFL20312.1
L-lysine 2,3-aminomutase, putative/acetyltransferase, GNAT family.
    
  0.806
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.805
EFL25556.1
orn/DAP/Arg decarboxylase, family 2.
     
 0.805
EFL29064.1
Carbon-nitrogen family hydrolase.
 
 
 0.798
EFL22567.1
Putative copper amine oxidase.
   
 
 0.760
EFL26406.1
Putative hydrolase; Unextendable partial coding region.
  
 
 0.756
EFL24523.1
Glutamate decarboxylase and related PLP-dependent protein.
    
 0.744
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.