STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL21821.1AAA family ATPase. (455 aa)    
Predicted Functional Partners:
EFL21822.1
Putative Membrane protein.
       0.809
EFL21826.1
ATPase involved in DNA repair.
 
   0.734
hisS
histidine-tRNA ligase.
       0.719
EFL21824.1
Metallo-beta-lactamase.
       0.715
EFL23393.1
Putative ATP-dependent DNA helicase PcrA.
   
 
 0.714
EFL20951.1
ATP-dependent DNA helicase RecQ.
 
 
 
 0.690
EFL22753.1
RecQ family ATP-dependent DNA helicase; Truncated CDS.
   
 
 0.636
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
     
 0.631
EFL21825.1
Peptidyl-prolyl cis-trans isomerase.
       0.628
EFL21816.1
alanine-tRNA ligase.
       0.605
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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