STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL21869.1LigA protein; Overlaps another CDS with the same product name. (352 aa)    
Predicted Functional Partners:
EFL24901.1
DNA polymerase III, subunits gamma and tau.
   
 
 0.874
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
  
 0.827
EFL21870.1
LigA protein; Overlaps another CDS with the same product name.
       0.789
EFL21872.1
Putative mucin-2 (MUC-2) (Intestinal mucin-2).
       0.783
EFL21871.1
LigA protein; Overlaps another CDS with the same product name.
       0.782
EFL21867.1
Conserved hypothetical protein.
       0.773
EFL21868.1
Hypothetical protein.
       0.773
EFL21873.1
Probable cell surface glycoprotein.
       0.773
EFL21874.1
Hypothetical protein.
       0.773
EFL21875.1
Hypothetical protein.
       0.773
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.