STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL21881.1LigA protein. (281 aa)    
Predicted Functional Partners:
EFL21879.1
Conserved hypothetical protein.
       0.742
EFL21878.1
LigA protein.
       0.725
EFL21880.1
Hypothetical protein.
       0.725
EFL21876.1
HNH endonuclease.
       0.714
EFL21877.1
Single-strand binding protein.
       0.714
EFL21873.1
Probable cell surface glycoprotein.
       0.560
EFL21872.1
Putative mucin-2 (MUC-2) (Intestinal mucin-2).
       0.485
EFL21874.1
Hypothetical protein.
       0.473
EFL21871.1
LigA protein; Overlaps another CDS with the same product name.
       0.470
EFL21867.1
Conserved hypothetical protein.
       0.460
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.