Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL21957.1Putative integrase. (763 aa)    
Predicted Functional Partners:
EFL21958.1
Conserved hypothetical protein.
 
 
 0.983
EFL21956.1
Conserved hypothetical protein.
       0.882
EFL21959.1
Mucin; Tracheobronchial mucin.
       0.783
EFL21903.1
LigA protein.
  
     0.714
EFL27959.1
Conserved hypothetical protein.
  
     0.683
EFL29326.1
5,10-methylenetetrahydromethanopterin reductase.
  
    0.682
EFL24981.1
Putative integrase; Belongs to the 'phage' integrase family.
  
     0.641
EFL20493.1
ABC transporter, permease/ATP-binding protein.
  
     0.620
EFL27630.1
Tn3 family transposase.
  
     0.588
EFL28743.1
PE-PGRS family protein; Unextendable partial coding region.
  
     0.563
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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