STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL21980.1RNA polymerase sigma-70 factor, ECF subfamily. (413 aa)    
Predicted Functional Partners:
EFL21979.1
Dgpfaetke-domain containing protein.
 
   
 0.927
EFL24635.1
RNA polymerase sigma-70 factor.
  
   
 0.447
EFL25839.1
Conserved hypothetical protein.
  
     0.425
EFL20906.1
RNA polymerase sigma-70 factor.
  
   
 0.410
EFL22240.1
Xre family toxin-antitoxin system, antitoxin component.
  
     0.409
EFL26559.1
Aha1 domain family protein.
 
     0.409
EFL24534.1
CalU12 protein.
 
    0.407
EFL21266.1
TIGR02957 family RNA polymerase sigma-70 factor.
  
   
 0.403
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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