STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL22037.1Coproporphyrinogen III oxidase. (449 aa)    
Predicted Functional Partners:
EFL22038.1
Radical SAM domain protein; Truncated CDS.
 
  
 0.975
EFL22035.1
Conserved hypothetical protein.
 
    0.974
EFL22036.1
Putative membrane-associated metal-dependent hydrolase.
 
     0.974
EFL22601.1
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
    
 0.918
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
 
 0.915
EFL22034.1
Putative cytoplasmic protein.
 
    0.910
EFL22032.1
Conserved hypothetical protein.
 
     0.894
EFL22033.1
WGR domain protein.
 
    0.885
EFL22031.1
Conserved hypothetical protein.
 
     0.876
EFL20443.1
Putative protoporphyrinogen oxidase.
    
 0.816
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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