STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL22053.1Putative squalene/phytoene dehydrogenase. (340 aa)    
Predicted Functional Partners:
EFL22051.1
Squalene-hopene cyclase.
 
   
 0.961
EFL22050.1
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein.
 
   
 0.956
EFL22049.1
Hopanoid biosynthesis associated radical SAM protein HpnH.
 
  
 0.955
EFL22055.1
Squalene synthase HpnC.
 
  
 0.953
EFL22054.1
Squalene synthase HpnD.
 
  
 0.949
EFL22052.1
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
   
 0.946
EFL21293.1
Putative lycopene cyclase.
    
 0.851
EFL22047.1
Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.800
EFL21296.1
Phytoene dehydrogenase (Phytoene desaturase); Unextendable partial coding region.
    
 0.666
EFL22048.1
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
     
 0.622
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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