STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL22100.1Putative secreted peptidase. (709 aa)    
Predicted Functional Partners:
EFL22101.1
Regulatory protein, LuxR.
 
    0.736
EFL21102.1
Leupeptin-inactivating enzyme 1 (LIE1).
    
 0.671
EFL25447.1
Putative peptidase; Belongs to the peptidase S8 family.
 
     0.589
EFL21742.1
Putative large secreted protein.
  
    0.582
EFL21663.1
LigA protein; Overlaps another CDS with the same product name.
  
    0.580
EFL21741.1
Putative large secreted protein.
  
  0.578
EFL28844.1
Ser/Thr protein phosphatase; Truncated CDS.
 
     0.570
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.557
EFL27805.1
EndA/NucM family protease/nuclease; Unextendable partial coding region.
    
 0.552
EFL20952.1
Putative glycosyl hydrolase.
  
  0.532
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.